Skip to content
Snippets Groups Projects
Commit b92c5abc authored by dilawar's avatar dilawar :ant:
Browse files

Update vendor/shodhka/test_20220727/README.md

parent 8911a6f7
No related branches found
No related tags found
No related merge requests found
...@@ -4,7 +4,8 @@ TrimGalore (first two steps) operations) ...@@ -4,7 +4,8 @@ TrimGalore (first two steps) operations)
Enclosed as a table below (also enclosed the corresponding excel file): Enclosed as a table below (also enclosed the corresponding excel file):
S.No. Analysis stage Tool used Input file type Code Output data type 1 Quality check FastQC fq / fastq ./fastqc ```
*fastq.gz text, html QC reports 2 Quality trimming TrimGalore fq / fastq S.No. Analysis stage Tool used Input file type Code Output data type
trim_galore --gzip --fastqc --max_n 2 --paired --length 50 1 Quality check FastQC fq / fastq ./fastqc *fastq.gz text, html QC reports
SRR11862696_1.fastq.gz SRR11862696_2.fastq.gz fq; fastq 2 Quality trimming TrimGalore fq / fastq trim_galore --gzip --fastqc --max_n 2 --paired --length 50 SRR11862696_1.fastq.gz SRR11862696_2.fastq.gz fq; fastq
```
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment