diff --git a/vendor/shodhka/test_20220727/README.md b/vendor/shodhka/test_20220727/README.md index beb34db18b95c442101985f2cdc07486d387eafc..d2bf52b6ad23f68acbed9effebeb90f95f0baf1d 100644 --- a/vendor/shodhka/test_20220727/README.md +++ b/vendor/shodhka/test_20220727/README.md @@ -4,7 +4,8 @@ TrimGalore (first two steps) operations) Enclosed as a table below (also enclosed the corresponding excel file): -S.No. Analysis stage Tool used Input file type Code Output data type 1 Quality check FastQC fq / fastq ./fastqc -*fastq.gz text, html QC reports 2 Quality trimming TrimGalore fq / fastq -trim_galore --gzip --fastqc --max_n 2 --paired --length 50 -SRR11862696_1.fastq.gz SRR11862696_2.fastq.gz fq; fastq +``` +S.No. Analysis stage Tool used Input file type Code Output data type +1 Quality check FastQC fq / fastq ./fastqc *fastq.gz text, html QC reports +2 Quality trimming TrimGalore fq / fastq trim_galore --gzip --fastqc --max_n 2 --paired --length 50 SRR11862696_1.fastq.gz SRR11862696_2.fastq.gz fq; fastq +```