added pipelines.
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- pipeline_dge/README.md 18 additions, 0 deletionspipeline_dge/README.md
- pipeline_dge/count_analysis.r 24 additions, 0 deletionspipeline_dge/count_analysis.r
- pipeline_dge/expected_output/count_matrix.txt 26491 additions, 0 deletionspipeline_dge/expected_output/count_matrix.txt
- pipeline_dge/expected_output/count_matrix_cleaned.txt 26486 additions, 0 deletionspipeline_dge/expected_output/count_matrix_cleaned.txt
- pipeline_dge/expected_output/edgeR_diff_genes.csv 11378 additions, 0 deletionspipeline_dge/expected_output/edgeR_diff_genes.csv
- pipeline_dge/expected_output/edgeR_normcounts.csv 26486 additions, 0 deletionspipeline_dge/expected_output/edgeR_normcounts.csv
- pipeline_dge/htseq-merge_all.r 47 additions, 0 deletionspipeline_dge/htseq-merge_all.r
- pipeline_dge/input_file_links.txt 16 additions, 0 deletionspipeline_dge/input_file_links.txt
- pipeline_dge/reference_file_links.txt 1 addition, 0 deletionspipeline_dge/reference_file_links.txt
- pipeline_dge/run.bitia.sh 33 additions, 0 deletionspipeline_dge/run.bitia.sh
- pipeline_dge/sample_groups.txt 9 additions, 0 deletionspipeline_dge/sample_groups.txt
- pipeline_huge_01/README.md 6 additions, 0 deletionspipeline_huge_01/README.md
- pipeline_huge_01/SampleInputFileLinks.txt 12 additions, 0 deletionspipeline_huge_01/SampleInputFileLinks.txt
- pipeline_huge_01/run.bitia.sh 18 additions, 0 deletionspipeline_huge_01/run.bitia.sh
- pipeline_medium_01/main.bitia.sh 14 additions, 0 deletionspipeline_medium_01/main.bitia.sh
- pipeline_medium_01/small_input_files.txt 6 additions, 0 deletionspipeline_medium_01/small_input_files.txt
- pipeline_small_01.zip 0 additions, 0 deletionspipeline_small_01.zip
- pipeline_small_01/main.bitia.sh 2 additions, 0 deletionspipeline_small_01/main.bitia.sh
pipeline_dge/README.md
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pipeline_dge/count_analysis.r
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source diff could not be displayed: it is too large. Options to address this: view the blob.
source diff could not be displayed: it is too large. Options to address this: view the blob.
source diff could not be displayed: it is too large. Options to address this: view the blob.
source diff could not be displayed: it is too large. Options to address this: view the blob.
pipeline_dge/htseq-merge_all.r
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pipeline_dge/input_file_links.txt
0 → 100644
pipeline_dge/reference_file_links.txt
0 → 100644
pipeline_dge/run.bitia.sh
0 → 100755
pipeline_dge/sample_groups.txt
0 → 100644
pipeline_huge_01/README.md
0 → 100644
pipeline_huge_01/SampleInputFileLinks.txt
0 → 100644
pipeline_huge_01/run.bitia.sh
0 → 100755
pipeline_medium_01/main.bitia.sh
0 → 100755
pipeline_medium_01/small_input_files.txt
0 → 100644
pipeline_small_01.zip
0 → 100644
File added
pipeline_small_01/main.bitia.sh
0 → 100755
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