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Commit b2a90444 authored by dilawar's avatar dilawar :ant:
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Merge branch 'main' of gitlab.subcom.tech:copr/copr-pipelines

parents 703423fe b92c5abc
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......@@ -4,7 +4,8 @@ TrimGalore (first two steps) operations)
Enclosed as a table below (also enclosed the corresponding excel file):
S.No. Analysis stage Tool used Input file type Code Output data type 1 Quality check FastQC fq / fastq ./fastqc
*fastq.gz text, html QC reports 2 Quality trimming TrimGalore fq / fastq
trim_galore --gzip --fastqc --max_n 2 --paired --length 50
SRR11862696_1.fastq.gz SRR11862696_2.fastq.gz fq; fastq
```
S.No. Analysis stage Tool used Input file type Code Output data type
1 Quality check FastQC fq / fastq ./fastqc *fastq.gz text, html QC reports
2 Quality trimming TrimGalore fq / fastq trim_galore --gzip --fastqc --max_n 2 --paired --length 50 SRR11862696_1.fastq.gz SRR11862696_2.fastq.gz fq; fastq
```
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