docs: add table of contents

docs/source/getting_started/Installation.md

@@ -10,6 +10,8 @@ BiTIA CLI is available on [PyPi] as [BiTIA].
 Installing bitia is very simple. You only need to have [python-pip] installed in your system.
 
 
+***
+
 
 
 To Install **BiTIA** using pip, run this command:

docs/source/getting_started/Working.md

@@ -30,6 +30,17 @@ To list available commands and options in bitia, execute `bitia --help`
 
 </div>
 
+```{toctree}
+:hidden:
+
+commands/bitia_checksum
+commands/bitia_logs
+commands/bitia_create_container
+commands/bitia_list_container
+commands/bitia_run
+commands/bitia_submit
+```
+
 ## Commands   
 <div style="float:left">
 

docs/source/getting_started/commands/bitia_checksum.md

@@ -44,6 +44,6 @@ value that represents the number of bits in a transmission message
 </div>
 
 
-<script type="text/javascript" src="../../_static/js/termynal.js" data-termynal-container="#termynal|#termynal1"></script>
+<script type="text/javascript" src="https://raw.githack.com/Ganz1285/terminal/main/termynal.js" data-termynal-container="#termynal|#termynal1"></script>
 
 

docs/source/index.md

@@ -30,14 +30,14 @@ BiTIA has two components: **bitia-cli** and **bitia-runner**.
 BiTIA CLI is on the client side and allows clients to submit tasks to the bitia server.
 BiTIA runner is on the server side and operates the given tasks to produce results.
 
-## **bitia-cli**
+## BiTIA CLI
 Most users only need the `bitia-cli` tool to submit tasks.
 BiTIA CLI creates a zip file of the user input(pipeline) containing a unique hash and ships it to the server.
 
 [see some examples]: examples
 
 ```{toctree}
-:hidden: true
+:hidden: 
 
 getting_started/Installation
 getting_started/Working