"docs: changes in example codes"

docs/source/getting_started/Examples.md

@@ -12,7 +12,7 @@ UBUNTU
 ````bash
 apt-get install wget samtools
 wget https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq
-samtools convert 1_control_18S_2019_minq7%20-%20Copy.fastq
+samtools view 1_control_18S_2019_minq7%20-%20Copy.fastq
 
 ````
 
@@ -23,7 +23,7 @@ BiTIA
     
 ````bash 
 
-bitia run "samtools convert <https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq>"
+bitia run "samtools view <https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq>"
 
 ````
 
@@ -40,7 +40,7 @@ UBUNTU
 <div id="termynal2" data-termynal>
 
 ````bash
-apt-get install wget samtools
+apt-get install wget fastqc
 wget sample.fastq https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq
 samtools convert sample.fastq
 ````
@@ -54,7 +54,7 @@ BiTIA
 
 ````bash
 
-bitia run "samtools convert <sample.fastq|https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq>"
+bitia run "fastqc <sample.fastq|https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq>"
     
 ````
 

docs/source/getting_started/tutorial/example_workflow.md

@@ -27,7 +27,7 @@ for that, you have to create a file with URLs having input files.
 
 <span data-ty>fastqc *.gz</span>
 
-<span data-ty>bitia tools download ./small_input_files.txt</span>
+<span data-ty>bitia-runner tools downloads ./small_input_files.txt</span>
 
 <span data-ty>for file in *_1.fastq.gz
 do