CHANGELOG.md

tests/pipeline_dge/README.md

tests/pipeline_dge/count_analysis.r

tests/pipeline_dge/expected_output/count_matrix.txt

tests/pipeline_dge/expected_output/count_matrix_cleaned.txt

tests/pipeline_dge/expected_output/edgeR_diff_genes.csv

tests/pipeline_dge/expected_output/edgeR_normcounts.csv

tests/pipeline_dge/htseq-merge_all.r

tests/pipeline_dge/input_file_links.txt

tests/pipeline_dge/reference_file_links.txt

tests/pipeline_dge/run.bitia.sh

tests/pipeline_dge/sample_groups.txt

tests/pipeline_huge_01/README.md

tests/pipeline_huge_01/SampleInputFileLinks.txt

tests/pipeline_huge_01/run.bitia.sh

tests/pipeline_medium_01/main.bitia.sh

tests/pipeline_medium_01/small_input_files.txt