diff --git a/data/non-curated/SampleInputFileLinks.txt b/data/non-curated/SampleInputFileLinks.txt
deleted file mode 100644
index 0c16ca5d34275adeeaa67a21707cff39ed5d07ad..0000000000000000000000000000000000000000
--- a/data/non-curated/SampleInputFileLinks.txt
+++ /dev/null
@@ -1,12 +0,0 @@
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/096/SRR11862696/SRR11862696_1.fastq.gz
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/096/SRR11862696/SRR11862696_2.fastq.gz
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/097/SRR11862697/SRR11862697_1.fastq.gz
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/097/SRR11862697/SRR11862697_2.fastq.gz
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/099/SRR11862699/SRR11862699_1.fastq.gz
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/099/SRR11862699/SRR11862699_2.fastq.gz
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/082/SRR11862682/SRR11862682_1.fastq.gz
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/082/SRR11862682/SRR11862682_2.fastq.gz
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/091/SRR11862691/SRR11862691_1.fastq.gz
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/091/SRR11862691/SRR11862691_2.fastq.gz
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/092/SRR11862692/SRR11862692_1.fastq.gz
-ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/092/SRR11862692/SRR11862692_2.fastq.gz
\ No newline at end of file
diff --git a/data/non-curated/TrainingDataSet_Process_Codes.xlsx b/data/non-curated/TrainingDataSet_Process_Codes.xlsx
deleted file mode 100644
index 9274d9783e06864b6f3e6a3af5613f3def54ba61..0000000000000000000000000000000000000000
Binary files a/data/non-curated/TrainingDataSet_Process_Codes.xlsx and /dev/null differ
diff --git a/vendor/shodhka/test_20220727/README.md b/vendor/shodhka/test_20220727/README.md
index 619539f0b1191ab60c98c637c1fa44a8458dce38..beb34db18b95c442101985f2cdc07486d387eafc 100644
--- a/vendor/shodhka/test_20220727/README.md
+++ b/vendor/shodhka/test_20220727/README.md
@@ -1,5 +1,10 @@
-a) Sample raw data: enclosed is a text file with dataset download links 
-b) file types for inputs and outputs at each step (particularly for FASTQC and TrimGalore (first two steps) operations): enclosed as a table below (also enclosed the corresponding excel file):
-S.No. Analysis stage Tool used Input file type Code Output data type
-1 Quality check FastQC fq / fastq ./fastqc *fastq.gz text, html QC reports
-2 Quality trimming TrimGalore fq / fastq trim_galore --gzip --fastqc --max_n 2 --paired --length 50 SRR11862696_1.fastq.gz SRR11862696_2.fastq.gz fq; fastq
+1. Sample raw data: enclosed is a text file with dataset download links.  
+2. File types for inputs and outputs at each step (particularly for FASTQC and
+TrimGalore (first two steps) operations)
+
+Enclosed as a table below (also enclosed the corresponding excel file): 
+
+S.No. Analysis stage Tool used Input file type Code Output data type 1 Quality check FastQC fq / fastq ./fastqc
+*fastq.gz text, html QC reports 2 Quality trimming TrimGalore fq / fastq
+trim_galore --gzip --fastqc --max_n 2 --paired --length 50
+SRR11862696_1.fastq.gz SRR11862696_2.fastq.gz fq; fastq
diff --git a/vendor/shodhka/test_20220727/run.copr.sh b/vendor/shodhka/test_20220727/run.copr.sh
new file mode 100755
index 0000000000000000000000000000000000000000..c265cdf84e911c1ffd5dc92198aca116c179501c
--- /dev/null
+++ b/vendor/shodhka/test_20220727/run.copr.sh
@@ -0,0 +1,11 @@
+#!/usr/bin/env bash
+
+FILES=$(cat ./data/SampleInputFileLinks.txt)
+for file in $FILES; do
+    # --no-clobber, do not download if file already exists.
+    wget -nc $file
+done
+
+fastqc *fastq.gz
+trim_galore --gzip --fastqc --max_n 2 --paired --length 50 \
+     SRR11862696_1.fastq.gz SRR11862696_2.fastq.gz