From 2ca0bef879936396a3a71a94d3cf8f1b812de76c Mon Sep 17 00:00:00 2001
From: Dilawar Singh <dilawar@subcom.tech>
Date: Wed, 27 Jul 2022 20:54:24 +0530
Subject: [PATCH] chore: Added pipeline version

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 vendor/shodhka/test_20220727/README.md | 5 +++++
 1 file changed, 5 insertions(+)
 create mode 100644 vendor/shodhka/test_20220727/README.md

diff --git a/vendor/shodhka/test_20220727/README.md b/vendor/shodhka/test_20220727/README.md
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+a) Sample raw data: enclosed is a text file with dataset download links 
+b) file types for inputs and outputs at each step (particularly for FASTQC and TrimGalore (first two steps) operations): enclosed as a table below (also enclosed the corresponding excel file):
+S.No. Analysis stage Tool used Input file type Code Output data type
+1 Quality check FastQC fq / fastq ./fastqc *fastq.gz text, html QC reports
+2 Quality trimming TrimGalore fq / fastq trim_galore --gzip --fastqc --max_n 2 --paired --length 50 SRR11862696_1.fastq.gz SRR11862696_2.fastq.gz fq; fastq
-- 
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