## BioInformatics Tool for Infrastructure Automation (BiTIA) ```{image} img/bitia.png ``` ```{image} https://img.shields.io/pypi/v/bitia.svg :target: https://pypi.python.org/pypi/bitia ``` ```{image} https://img.shields.io/pypi/pyversions/bitia.svg :target: https://www.python.org ``` BiTIA is a tool that simplifies the infrastructure required to run complex bioinformatics pipelines. BiTIA plays well with the existing pipeline solution such as snakement. BiTIA has two components: bitia-cli and bitia-runner. - **bitia-cli** Creates a zip file of the user input(pipeline) containing a unique hash and ships it to the server. - **bitia-runner** Runs following works in the server - Creates a docker container with the user input - Runs the pipeline - Sends log to the user - Sends link of results(artifacts) to the user - Interacts with common cache for reading data/reference files [see some examples]: examples ```{toctree} :caption: Getting started :hidden: true :name: getting_started getting_started/Installation getting_started/Working ``` If you want to learn how to use BiTIA and installation, check out the following resources: - [Installation](getting_started/Installation.md) - [Working with BiTIA](getting_started/Working.md) ```{eval-rst} .. automodule:: bitia ```