Update Documentation

Edits in bitia-cli documentation with tagged-sectons for installation an configurations

docs/source/index.md

@@ -21,20 +21,11 @@ BiTIA is a tool that simplifies the infrastructure required to run complex bioin
 BiTIA has two components: **bitia-cli** and **bitita-runner**.
 BiTIA CLI is on the clientside and allows clients to submit tasks to the bitia server.
 BiTIA runner is on the serverside and operates the given tasks to produce results.
-<<<<<<< HEAD
 
 ## **bitia-cli**
 Most users only need the `bitia-cli` tool to submit tasks.
 BiTIA CLI creates a zip file of the user input(pipeline) containing a unique hash and ships it to the server.
 
-=======
-
-## **bitia-cli**
-Most users only need the `bitia-cli` tool to submit tasks.
-BiTIA CLI creates a zip file of the user input(pipeline) containing a unique hash and ships it to the server.
->>>>>>> c83ee47 (Edits in bitia documentation)
-
-
 [see some examples]: examples
 
 ```{toctree}
@@ -58,7 +49,6 @@ If you want to learn how to use BiTIA and installation, check out the following
 </details>
 <details>
 <summary><b>INSTALLATION</b></summary>
-<<<<<<< HEAD
 
   To Install BiTIA using pip, run this command:
   ```{eval-rst}
@@ -156,7 +146,6 @@ NGS bioinformatics pipelines are frequently platform specific and may be customi
 
 #### Usage Examples
 
-<<<<<<< HEAD
 - **Running Commands**
 ```bash
 $ bitia run "samtools foo.fa#https://samtools.github.io/hts-specs/VCFv4.3.pdf"