From 2cb3c92c31030f0ea989b0e0c3586fa694dcc692 Mon Sep 17 00:00:00 2001
From: selva <selvaganz1285@gmail.com>
Date: Wed, 16 Nov 2022 16:20:14 +0530
Subject: [PATCH] changes of typos
---
docs/source/getting_started/Working.md | 14 +++++++-------
1 file changed, 7 insertions(+), 7 deletions(-)
diff --git a/docs/source/getting_started/Working.md b/docs/source/getting_started/Working.md
index eb06fce..224c06e 100644
--- a/docs/source/getting_started/Working.md
+++ b/docs/source/getting_started/Working.md
@@ -1,6 +1,6 @@
# WORKING WITH BiTIA
-To List available commands and options in bitia, execute `bitia --help`
+To list available commands and options in bitia, execute `bitia --help`
<div id="termynal" data-termynal>
<span data-ty="input">python -m bitia --help </span>
@@ -58,13 +58,13 @@ Usage: python -m bitia run [OPTIONS] USER_INPUT<br>
The Argument `user_input` can be used in three ways:
-1. Executing Commands
+1. Executing commands
2. Executing pipelines
-3. Executing Directories with multiple required files
+3. Executing directories with multiple required files
**1. Executing Commands**
- For executing any single task of BioInformatics pipeline, we can instruct Bitia specific single-line commands.
+ For executing any single task of bioInformatics pipeline, we can instruct Bitia specific single-line commands.
<div id="termynal2" data-termynal>
@@ -76,12 +76,12 @@ The Argument `user_input` can be used in three ways:
The above code will:
- Checks for the input file `foo.fa` in the current working directory
-- Download the input file from the given link `http://example.com/foo.fa` and name it `foo.fa`
-- Add the given command `samtools convert <foo.fa|http://example.com/foo.fa` into a pipeline file.
+- Download the input file from `http://example.com/foo.fa` and name it `foo.fa`
+- Add the command `samtools convert <foo.fa|http://example.com/foo.fa` into a pipeline file.
- Extract the current working directory with the pipeline as a zip file that contains a unique hash and send it to the server `public.bitia.link`
- The BiTIA runner in the server will execute the pipeline by:
- Installing the given command `samtools`
- - Downloading the given input file from the link `http://example.com/foo.fa` and name it `foo.fa`
+ - Downloading the given input file from `http://example.com/foo.fa` and name it `foo.fa`
- Executing the command `samtools convert foo.fa`
- Display the resulting output to the user console
--
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