From 203cf1a39564a347cb87a16e35c6f18422654c1b Mon Sep 17 00:00:00 2001
From: selva <selvaganz1285@gmail.com>
Date: Wed, 16 Nov 2022 16:15:48 +0530
Subject: [PATCH] changes in examples
---
docs/source/getting_started/Examples.md | 133 +++++++++---------------
1 file changed, 48 insertions(+), 85 deletions(-)
diff --git a/docs/source/getting_started/Examples.md b/docs/source/getting_started/Examples.md
index 8550d0c..1e04325 100644
--- a/docs/source/getting_started/Examples.md
+++ b/docs/source/getting_started/Examples.md
@@ -1,111 +1,74 @@
## EXAMPLES
-<link rel="stylesheet"href="/home/selva/bitia/bitia-cli/docs/source/getting_started/termynal.css">
-1. Using samtools to view a fastq file with same name as provided in url
- <div class="tab">
- <button class="tablinks" onmouseover="openCity(event, 'Ubuntu:0');new Termynal('#termynal')">Ubuntu</button>
- <button class="tablinks" onmouseover="openCity(event, 'Pacman:0');new Termynal('#termynal1')">Pacman</button>
- <button class="tablinks" onmouseover="openCity(event, 'bitia:0');new Termynal('#termynal2')">BiTIA</button>
- </div>
+1. Using samtools to view a fastq file with same name as provided in url
- <div id="Ubuntu:0" style="display: block;" class="tabcontent0">
- <div id="termynal" data-termynal>
+
+<div class="tab">
+<div class="lft">
+UBUNTU
+<div id="termynal" data-termynal>
<span data-ty="input">apt-get install wget samtools</span>
<span data-ty="input">wget https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq</span>
<span data-ty="input">samtools convert 1_control_18S_2019_minq7%20-%20Copy.fastq</span>
- </div>
- </div>
-
- <div id="Pacman:0" style="display: none;"class="tabcontent0">
- <div id="termynal1" data-termynal>
- <span data-ty="input">pacman -S wget samtools</span>
- <span data-ty="input">wget https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq</span>
- <span data-ty="input">samtools convert 1_control_18S_2019_minq7%20-%20Copy.fastq</span>
- </div>
- </div>
-
- <div id="bitia:0" style="display: none;" class="tabcontent0">
- <div id="termynal2" data-termynal>
+</div>
+</div>
+<div class="rgt">
+BiTIA
+<div id="termynal1" data-termynal>
<span data-ty="input">bitia run "samtools convert <https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq>"</span>
- </div>
- </div>
-
- <div class="clearfix"></div>
-
- <br>
+</div>
+</div>
+</div>
+
+<br>
2. Using samtools to view a fastq file with different file name as provided in url
- <div class="tab">
- <button class="tablinks" onmouseover="openCity(event, 'Ubuntu:1');new Termynal('#termynal3')">Ubuntu</button>
- <button class="tablinks" onmouseover="openCity(event, 'Pacman:1');new Termynal('#termynal4')">Pacman</button>
- <button class="tablinks" onmouseover="openCity(event, 'bitia:1');new Termynal('#termynal5')">BiTIA</button>
- </div>
-
- <div id="Ubuntu:1" style="display: block;" class="tabcontent1">
- <div id="termynal3" data-termynal>
+
+<div class="tab">
+<div class="lft">
+UBUNTU
+<div id="termynal2" data-termynal>
<span data-ty="input">apt-get install wget samtools</span>
<span data-ty="input">wget sample.fastq https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq</span>
<span data-ty="input">samtools convert sample.fastq</span>
- </div>
- </div>
-
- <div id="Pacman:1" style="display: none;"class="tabcontent1">
- <div id="termynal4" data-termynal>
- <span data-ty="input">pacman -S wget samtools</span>
- <span data-ty="input">wget sample.fastq https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq</span>
- <span data-ty="input">samtools convert sample.fastq</span>
- </div>
- </div>
-
- <div id="bitia:1" style="display: none;" class="tabcontent1">
- <div id="termynal5" data-termynal>
- <span data-ty="input">bitia run "samtools convert <sample.fastq|https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq>"</span>
- </div>
- </div>
-
-
- <div class="clearfix"></div>
-
- <br>
+</div>
+</div>
+<div class="rgt">
+BiTIA
+<div id="termynal3" data-termynal>
+<span data-ty="input">bitia run "samtools convert <sample.fastq|https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq>"</span>
+
+</div>
+</div>
+</div>
+<br>
3. Using fastqc to do a Quality check on a fastq file with same file name as provided in url
<br>
- <div class="tab">
- <button class="tablinks" onmouseover="openCity(event, 'Ubuntu:2');new Termynal('#termynal6')">Ubuntu</button>
- <button class="tablinks" onmouseover="openCity(event, 'Pacman:2');new Termynal('#termynal7')">Pacman</button>
- <button class="tablinks" onmouseover="openCity(event, 'bitia:2');new Termynal('#termynal8')">BiTIA</button>
- </div>
-
- <div id="Ubuntu:2" style="display: block;" class="tabcontent2">
- <div id="termynal6" data-termynal>
+
+<div class="tab">
+<div class="lft">
+UBUNTU
+<div id="termynal4" data-termynal>
<span data-ty="input">apt-get install wget fastqc</span>
<span data-ty="input">wget https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq</span>
<span data-ty="input">fastqc 1_control_18S_2019_minq7%20-%20Copy.fastq</span>
- </div>
- </div>
-
- <div id="Pacman:2" style="display: none;"class="tabcontent2">
- <div id="termynal7" data-termynal>
- <span data-ty="input">pacman -S wget fastqc</span>
- <span data-ty="input">wget sample.fastq https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq</span>
- <span data-ty="input">fastqc 1_control_18S_2019_minq7%20-%20Copy.fastq</span>
- </div>
- </div>
-
- <div id="bitia:2" style="display: none;" class="tabcontent2">
- <div id="termynal8" data-termynal>
- <span data-ty="input">bitia run "fastqc <https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq>"</span>
- </div>
- </div>
-
-
- <div class="clearfix"></div>
+</div>
+</div>
+<div class="rgt">
+BiTIA
+<div id="termynal5" data-termynal>
+ <span data-ty="input">bitia run "fastqc <https://zenodo.org/record/3736457/files/1_control_18S_2019_minq7%20-%20Copy.fastq>"</span>
+
+</div>
+</div>
+</div>
-<script type="text/javascript" src="https://raw.githack.com/Ganz1285/termynal/master/termynal.js"></script>
+<script type="text/javascript" src="https://raw.githack.com/Ganz1285/termynal/master/termynal.js"data-termynal-container="#termynal|#termynal1|#termynal2|#termynal3|#termynal4|#termynal5"></script>
--
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